Publications

 *Please e-mail me to obtain a copy of any of the listed publications or presentations.

Publications and Conference Presentations

Jose Laborde, Daniel Robinson, Anuj Srivastava, Eric Klassen, and Jinfeng Zhang RNA global alignment in the joint sequence–structure space using elastic shape analysis Nucl. Acids Res. (2013) 41 (11): e114. doi:10.1093/nar/gkt187

Laborde, J., Srivastava A., Zhang J. 2011. Structure-based RNA Function Prediction using Elastic Shape Analysis, 2011 IEEE International Conference on Bioinformatics and Biomedicine. DOI 10.1109/BIBM.2011.119.

Wei Wu, Anuj Srivastava, Jose Laborde, Jinfeng Zhang, Multiple global protein structure alignment using multidimensional curve registration, submitted to IEEE-BIBM 2013. (accepted)

Papers in revision

Jose Laborde, Anuj Srivastava, Jinfeng Zhang, Alignment of proteins in the joint sequence-structure space and its application to phylogenetic inference, submitted to ISMB 2013.

Papers in preparation

Laborde, J., Srivastava A., Zhang J.  Protein/RNA networks based on Elastic Shape Geodesic Distances.  

Laborde, J., Srivastava A., Zhang J.  On the Statistical Distribution of Pairwise Elastic Shape Distances of Biomolecules.

Jose Laborde, Gewen He, Jinfeng Zhang, Peixiang Zhao, and Anuj Srivastava.  ESA-RNA: A webserver for the joint structure-sequence comparison of RNAs using Elastic Distances

Jose Laborde, Jinfeng Zhang, and Anuj Srivastava.  Fast elastic shape distance based classification of protein domains by Multiple Centroid Class Partitioning (MCCP)

Invited Presentations

Statistics Club, Research Overview, FSU 2011